1. LocaliZoom viewer only

Basic operations

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In LocaliZoom viewer, serial section images (1) are represented in a filmstrip at the bottom of the webpage user interface, with the selected section image shown with an atlas overlay (2) in the main view.

In the upper panel, users can adjust the transparency of the atlas overlay (3) allowing them to see the experimental image and the atlas regions simultaneously. The outline appears when minimum transparency is selected. It is possible to change the colour of the outline (4) and see the name of the image file (6).

In the middle panel, the pointer of the mouse will show the atlas region name (5). The main image can be zoomed and panned.

Controls:

  • Pan and zoom with mouse drag and mouse scroll wheel

  • Step backwards and forwards in series with left and right arrow keys

  • Quick set segmentation transparency to minimum and back using down and up arrow keys

  • Drag an annotation marker to refine its position

Coordinates of points

The user can visualise the coordinates of the mouse pointer (7) and switch between different coordinate spaces when available.

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